ceratodon purpureus domain
DNA Data Bank of Japan; a nucleotide sequence database, Database of comparative protein structure models, ProtoNet; Automatic hierarchical classification of proteins, MobiDB: a database of protein disorder and mobility annotations. ... (TE) domain of hFAS, which cleaves fatty acid from fatty acyl carrier protein (ACP), was replaced with heterologous short-chain TEs: one from Cuphea palustris (CpFatB1) and the other from Rattus norvegicus (TEII). It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.
,This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.
,This subsection of the Family and Domains section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.
,Information which has been generated by the UniProtKB automatic annotation system, without manual validation.
Ceratodon purpureus is considered to be a pioneer species and can often be seen in abundance on burn sites. var. 1992). using the generator polynomial: x64 + x4 + x3 + x + 1. The phytochrome gene of the moss Ceratodon purpureus @byCer) codes for a novel phytochrome polypeptide with a predicted molecular mass of 145 kDa that has a COOH-terminal domain which is homologous to the catalytic domain of eukaryotic protein kinases. rotundifolius Berggr. Ceratodon purpureus is typically found growing in areas that are frequently disturbed or on soils that are sterile. Abstract. A bifunctional Δ 6 desaturase/acetylenase gene was identified from the moss Ceratodon purpureus. Biotic crusts, Brachythecium, Bryum caespiticium, Ceratodon purpureus, ecosystem services, Funaria hygrometrica, lichen, logging, Pacific Northwest, Rhytidiadelphus, rodents. : Domain : Eukaryota • Regnum : Plantae • Phylum : Bryophyta • Classis : Bryopsida • Subclassis : Dicranidae • Ordo : Dicranales • Familia : Ditrichaceae • Genus : Ceratodon • Species: Ceratodon purpureus Limpr. More information: Elisabeth M. Biersma et al, Latitudinal Biogeographic Structuring in the Globally Distributed Moss Ceratodon purpureus, Frontiers in Plant Science (2020). Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)),This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.
,This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (UniRef).
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,This section provides general information on the entry.
,This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. The phytochrome gene of the moss Ceratodon purpureus (phyCer) codes for a novel phytochrome polypeptide with a predicted molecular mass of 145 kDa that has a COOH-terminal domain which is homologous to the catalytic domain of eukaryotic protein kinases.
This subsection of the Sequence section indicates if the canonical sequence displayed by default in the entry is complete or not.
Sequence statusi: Fragment. The development of the regeneration axis is strongly influenced by light, with axis alignment and axis polarity being fixed independently. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.,This subsection of the 'Entry information' section provides one or more accession number(s). Please consider upgrading,
An evidence describes the source of an annotation, e.g. with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018. Each shoot has an unbranched central stem that is terete, hairless, and light green (above) to reddish brown (below). The CpPHY1 recombinant C‐terminal domain was demonstrated to phosphorylate serine and … Ceratodon purpureus var. The stems, which are red-brown in color, are typically unbranched and are upright. It grows upright in dense mound colonies that feel like velvet to the touch.
Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.
Sperling P (1), Lee M, Girke T, Zähringer U, Stymne S, Heinz E. Author information: (1)Institut für Allgemeine Botanik, Universität Hamburg, Germany. xanthopus Sull. In the moss Ceratodon purpureus a phytochrome gene encodes a phytochrome type (PhyCer) which has a C-terminal domain homolog ous to the catalytic domain of eukaryotic protein kinases (PKs; Thiimmler et al. In addition to the ferns, phototropism and polarotropism of protonemata are also regulated by phytochromes in some mosses, such as Ceratodon purpureus, Funaria hygrometrica and Physcomitrella patens (Bittisnich & Williamson 1985; Hartmann et al. have the same checksum value, the likelihood that this would happen
It also includes information pertinent to the sequence(s), including length and molecular weight.
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,This indicates the type of evidence that supports the existence of the protein. If growing in an area that is not disturbed, it is most likely growing in a site that is exposed and dries out rapidly, such as on walls, roadsides and rooftops. In this paper we report the first biochemical evidence that in fact, as predicted from the gene sequence, PhyCer represents an … Many plant genes have been cloned that encode regioselective desaturases catalyzing the formation of cis‐unsaturated fatty acids. Purple Moss (Ceratodon purpureus) Description: This short-lived perennial moss forms dense to open mats of both fertile and infertile shoots. Ceratodon purpureus (Fire moss) (Dicranum purpureum) Status. It is one of the most common cosmopolitan mosses, occurring on a wide variety of substrata, particularly those that are well-drained and acidic. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.
,This section provides any useful information about the protein, mostly biological knowledge.
,The Gene Ontology (GO) project provides a set of hierarchical controlled vocabulary split into 3 categories:
,This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.
,This subsection of the Names and taxonomy section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.
,Information which has been imported from another database using automatic procedures.
Ceratodon purpureus var. Brid. The version number for both the entry and the canonical sequence are also displayed.,This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (reviewed) or to the computer-annotated TrEMBL section (unreviewed).
, The European Molecular Biology Laboratory, State Secretariat for Education, Research and Innovation, Ceratodon purpureus (Fire moss) (Dicranum purpureum). Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.,This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). A strong single costa runs the length of the leaf, ending in the leaf’s acutely-pointed apex. Jenn. var. Ceratodon purpureus and S. antarctici exhibited significantly lower cell wall UVAC concentrations after 2 weeks but did not significantly alter intracellular UVAC (Fig. The present study was undertaken to examine the single- ... Domain architecture of the cyanobacterial phytochrome 1 (Cph1), the … SPECIES: Ceratodon purpureus GENERAL DISTRIBUTION : Fire moss is widespread throughout Canada, where it is known from every province and territory. The Plants Database includes the following 2 subspecies of Ceratodon purpureus . We have characterized several new phytochrome B mutants in Arabidopsis that express phyB protein, three of which affect the histidine kinase-related domain. Automatic assertion inferred from database entriesi, Automatic assertion inferred from database entriesi,
Information which has been generated by the UniProtKB automatic annotation system, without manual validation.
Individual shoots are about 0.5–3 cm. Ceratodon purpureus. ... Family and domain databases. The information is filed in different subsections. This is known as the 'taxonomic identifier' or 'taxid'.,This subsection of the Names and taxonomy section contains the taxonomic hierarchical classification lineage of the source organism. In the moss Ceratodon purpureus a phytochrome gene encodes a phytochrome type (PhyCer) which has a C-terminal domain homologous to the catalytic domain … Ceratodon purpurascens (Hedw.) These are stable identifiers and should be used to cite UniProtKB entries. Ceratodon purpureus (Fire moss) (Dicranum purpureum) Status. purpureus – ceratodon moss P: Variety Ceratodon purpureus (Hedw.) Your email address will not be published. Be forewarned, Ceratodon may go through a dormant or adjustment phase when it turns brown for a while. Common Name(s): Taxonomic Status: Current Standing: accepted Data Quality Indicators: Record Credibility Rating: verified - standards met In the moss Ceratodon purpureus a phytochrome gene encodes a phytochrome type (PhyCer) which has a C-terminal domain homologous to the catalytic domain of eukaryotic protein kinases (PKs). The shoots, which are usually unbranched, can reach a height of up to around 3 cm. Historically, Ceratodon has been a troubling genus. Systems used to automatically annotate proteins with high accuracy: Select one of the options below to target your search: Select item(s) and click on "Add to basket" to create your own collection here (400 entries max),
Information which has been imported from another database using automatic procedures.
The current subsections and their content are listed below:,This subsection of the Sequence section indicates if the canonical sequence displayed by default in the entry is complete or not.
,The checksum is a form of redundancy check that is calculated
,This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. This small plant usually forms cushions or dense short tufts that can vary in color from yellow to mid-green or red to purplish-brown. In the moss Ceratodon purpureus, phytochrome is encoded by two different genes, CpPHY1 and CpPHY2. Help pages, FAQs, UniProtKB manual, documents, news archive and Biocuration projects. The kinetics of regeneration show that some cellular event has to be completed before regeneration can be initiated. The PAS repeat domain is important for proper phytochrome function and can interact with putative signaling partners. The leaves of this species are lance-shaped, typically spreading when moist and contorted when dry. Bryoid layer response to soil disturbance by fuel reduction treatments in a dry conifer forest; Grazing and logging effects on soil surface changes in central Colorado's ponderosa pine type J. A common and widespread species, Ceratodon purpureus exhibits a wide degree of morphological variation, sometimes leading to the recognition of different taxa at various taxonomic levels. When they are young and immature they tend to be almost upright, smooth and green in color. Required fields are marked *. rotundifolius roundleaf ceratodon … Furthermore, the cells that form the alar region are not differentiated. Click below on a thumbnail map or name for subspecies profiles. Ceratodon purpureus is typically found growing in areas that are frequently disturbed or on soils that are sterile. populations of phytochrome molecules in the moss Ceratodon purpureus by fluorescence correlation spectroscopy (FCS) (14). Automatic assertion inferred from signature matchi, Integrated resource of protein families, domains and functional sites, Simple Modular Architecture Research Tool; a protein domain database, Superfamily database of structural and functional annotation. Ceratodon purpureus – This tiny moss has brilliant, deep green color with magnificent red sporophytes. The product of the latter, dicranin, is the main fatty acid found in C. purpureus. A new member of the cytochrome b5 superfamily. Wikispecies has an entry on: Ceratodon purpureus .
It should be noted that while, in theory, two different sequences could Taxonomic interpretations, especially with respect to C. purpureus in the broad sense, have varied widely, mainly because of the high degree of environmental and suspected genetic variation across its range. It is useful for tracking sequence updates.
The common names “red roof moss” and “fire moss” make reference to some of its preferred habitats. purpureus ceratodon moss Ceratodon purpureus var. CpPHY2 represents a conventional type phytochrome characterized by a C-terminus homologous to the catalytic domain of bacterial sensor histidine kinases, whereas CpPHY1 represents an unique phytochrome, which carries a C-terminus homologous to the catalytic domain of eukaryotic … , Automatic assertion inferred from database entries,This subsection of the Names and taxonomy section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Patricia Algarra's 13 research works with 302 citations and 433 reads, including: Structural Adaptations to Light Reception in Two Morphotypes of Corallina elongata ELLIS & SOLAND Ceratodon protoplasts regenerate by polar outgrowth to form cell filaments. CpPHY2 represents a conventional type phytochrome characterized by a C-terminus homologous to the catalytic domain of bacterial sensor histidine kinases, whereas CpPHY1 represents an unique phytochrome, which carries a C-terminus homologous to the catalytic domain of eukaryotic … 4 and Table 3). The Sphagnum microbiome: new insights from an ancient plant lineage; Sphagnum mosses limit total carbon consumption during fire in Alaskan black spruce forests of multiple genes (paralogs).
A homologous phytochrome (CpPHY1) has been characterized previously from the moss Ceratodon purpureus (Pasentsis et al., 1998; Thummler et al., 1992). Therefore, the apparent declining trend in total UVAC was insignificant. from the sequence. Ceratodon purpureus is considered to be a pioneer species and can often be seen in abundance on burn sites. The enzyme, characterized from the moss Ceratodon purpureus, converts the double bond at position 6 of gamma-linolenate and stearidonate into a triple bond. Although generally easily recognized with experience, occasional confusion with other superficially similar taxa (e.g. The seta of this species is generally reddish in color when young and becomes purple when it reaches maturity, which is a distinctive characteristic of C. purpureus. Native Introduced Native and Introduced. Brid. As they mature, they become more inclined and change to a reddish-brown to purplish color. – ceratodon moss P: Species Ceratodon purpureus (Hedw.)However UniProtKB may contain entries with identical sequences in case Bryum argenteum, Ceratodon purpureus, Funaria hygrometrica, mixed-conifer forest, ponderosa pine forest, post fire, soil erosion Related Search. Unreviewed-Annotation score: ... Family and domain databases. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.
,This subsection of the Names and taxonomy section provides information on the name(s) of the organism that is the source of the protein sequence.
,This subsection of the Names and taxonomy section shows the unique identifier assigned by the NCBI to the source organism of the protein. The algorithm is described in the ISO 3309 standard. Brid. Fieldtrip: UBC Herbarium and Beaty Museum, LiToL: Assembling the Liverwort Tree of Life, Southern Illinois University-Carbondale: Bryoology. Furthermore, the margins are recurved from the base to the tip of the leaf. A closer look at the cells in the leaf will reveal that the upper cells are quadrate and smooth, while those closer to the base are usually somewhat longer. can occur, especially when plants are sterile. Goffinet et al. Mosses are distributed throughout the world except in salt water and are commonly found in moist shady locations. Didymodon spp.) The common sporophytes are oblong to long-cylindrical in shape and have a swollen base. tall. In the United States it occurs in every state. Genus Ceratodon Brid. We'd like to inform you that we have updated our Privacy Notice to comply In the moss Ceratodon purpureus, phytochrome is encoded by two different genes, CpPHY1 and CpPHY2. You are using a version of browser that may not display all the features of this website.
The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64)
Protein sets from fully sequenced genomes. – roundleaf ceratodon moss P an experiment that has been published in the scientific literature, an orthologous protein, a record from another database, etc. Teeth are often present along the margins near the apex. is extremely low. Cyclic redundancy and other checksumsRelated Search. – ceratodon moss P : Contains 2 Varieties and 2 accepted taxa overall : Down one level : Variety Ceratodon purpureus (Hedw.) Moss, any of at least 12,000 species of small nonvascular spore-bearing land plants. & Lesq. The older and dry sporangia are generally ribbed and the peristome is single. The deduced molecular weight of PhyCer is about 145 kDa; in-vitro phosphoryla tion experiments with extracts obtained from C. purpureus It is one of the most common cosmopolitan mosses, occurring on a wide variety of substrata, particularly those that are well-drained and acidic. They are best known for those species that carpet woodland and forest floors. Dicranum purpureum Hedw. The other organism used in this study, the moss Ceratodon purpureus, contains four phytochromes, termed Phy1 to Phy4 (Thümmler et al., 1992; Hughes et al., 1996; Mittmann et al., 2009). Your email address will not be published. PhyCer exhibits sequence conservation to serine/ threonine as well to tyrosine kinases. 1983; Jenkins & Cove 1983). A bifunctional delta-fatty acyl acetylenase/desaturase from the moss Ceratodon purpureus. In such cases, closer examination with a compound microscope may be required to name difficult specimens with confidence. Species Ceratodon purpureus, phytochrome is encoded by two different genes, CpPHY1 and.... Strong single costa runs the length of the leaf and green in color Biocuration projects of. Small nonvascular spore-bearing land Plants the United States it occurs in every state the shoots, which are red-brown color! 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These are stable identifiers and should be used to cite UniProtKB entries in shape and a. An evidence describes the source of An annotation, e.g before regeneration can be initiated upgrading, P. By fluorescence correlation spectroscopy ( FCS ) ( Dicranum purpureum ) Status overall: Down one level Variety. Not differentiated short-lived perennial moss forms dense to open mats of both fertile and infertile shoots are! Red roof moss ” make reference to some of its preferred habitats nonvascular spore-bearing land.... The following 2 subspecies of Ceratodon purpureus by fluorescence correlation spectroscopy ( FCS ) ( Dicranum purpureum ) Status putative...: UBC Herbarium and Beaty Museum, LiToL: Assembling the Liverwort Tree of Life Southern... Ceratodon may go through a dormant or adjustment phase when it turns brown for a while are generally ribbed the. Red roof moss ” make reference to some of its preferred habitats not display all the features ceratodon purpureus domain this are! Outgrowth to form cell filaments 3309 standard are young and immature they tend to be almost upright smooth. Includes the following 2 subspecies of Ceratodon purpureus fertile and infertile shoots > An evidence describes the source of annotation. Kinase-Related domain of phytochrome molecules in the United States it occurs in every state is strongly influenced by light with.: Assembling the Liverwort Tree of Life, Southern Illinois University-Carbondale: Bryoology before regeneration can be initiated in... With other superficially similar taxa ( e.g well to tyrosine kinases fatty acid found in C. purpureus acid found C.. By light, with axis alignment and axis polarity being fixed independently region are not differentiated bifunctional delta-fatty acetylenase/desaturase. And axis polarity being fixed independently > An evidence describes the source of An annotation,.... Protoplasts regenerate by polar outgrowth to form cell filaments some cellular event to! Being fixed independently forewarned, Ceratodon may go through a dormant or adjustment when... In shape and have a swollen base not differentiated phytochrome is encoded by two different genes CpPHY1. Purpureum ) Status, news archive and Biocuration projects cushions or dense short tufts that can in! A pioneer species and can interact with putative signaling partners a dormant or adjustment phase it!
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